Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015916418.1_cds_XP_016466133.1_59016
CDS Infomation

[gene=LOC107788911] [db_xref=GeneID:107788911] [protein=violaxanthin de-epoxidase, chloroplastic-like] [protein_id=XP_016466133.1] [location=join(34953..35261,37199..38512)] [gbkey=CDS]
Sequence

ATGAATGTAAACGTAGCACCATCTTCCTCCATCAATTCTCCGGCTACTTTTCCGGTTAAC
CGGCGGTCCAGTGTCGCCGGACTTCTAAATCCTCTTCTTCTCCGCTGCCGGAAAACTAAA
GTGTCCGTCTTTTCTTCTTCTCTTGACCGGAAAATCAGAGCTACAAGAAGAATACTAGCT
GCTGCTGCTCTGGAAATGAAAGAAGCAGAGAAAAAAACAAGTAGTCCAGTGAGAATAGTG
AGTATTGTTGGTGAGGATAGTGTTAGCCCTCTCAATTCTGCTCCTTGGCTAGATGTCATG
CTTCACACTGCAGAGAGACTGAAATGGGTTGATGAAGAGTTTGAAATGATTGTCTTTTCT
GACAACTTTATCAATTCTCAAGATGAAACTGTCAACCGCGTTAGAAATGAGCTGGATCGT
GCTGATATTTTGGTGCTGGTTGCTGTTAGTAAGGAAGGATCAGTCAACTGGATACAGACT
AACAGCCAGAATGTCCCAAATACCATATGCTTTGATTCCTCTTCGGCACTGAGAAACAAG
CTGGGCGGAATTTTGATTGAAACTGAAAAAAGAGGAGACATATTCAGCAGTTTACTTCCA
TTCTCTCAATCTAAGAAAATGAATGAATCTGTAGAGATAGTTCGAACAGTATCTGAGGCT
TGGGAAAGGCATAACGCTGATGACATACGGTTCTGCTTATTAGTTATAATTAATTCTTAT
ATAACACCGGTTTCAACACTGCAGAACCTTAGAGCAAAAGGATTCTCCACCCTGAACTGC
ATGGTGACAAATTGCGGACCTCAGATATTGAATTGTCTACTGGATCCTAATTGTAGGAAG
GCACTTCAGTGCTTGAACCAGTGCAGCCCTGTAGATCAAGTATGCAATTATCGGTGTATT
GCTTCATATGAGAGTCAATACCTGGAAGAGTTTTCTCTCTGTGTACTACAGAAGAATAAC
TGTCTTGAGCTCGACGCAAAGATCCCTGAAAAACCTTATGTGCCTCCAATGACCGAGTTT
CGAGGGGAAATATTGTCTTCTGAAATAGCTGAGGACCTTTTTGTGGGTTGGTTAGGGACA
TTGAATTGGAGTTGGCGCGTTGTAGCAGGGCAGAATCCAGCTTATGATCAATTTCCATGC
CAGTACCAGCTATACTATCGGGGAAAAGCTAGAGGATCATTCTGGTATGAGCCAGTTTTC
CAGGTAAGAACACTTGAAGATAACTTAGTCTGGAGAAGGCGCAAGTATAGAGTGAAAAGA
GGAAAAGTTCCCGGAACATTTCAATTCAGTGTATTGGATAATGGAGTTGTTTCAATTGAG
TCGTGGACAATTGTGGATGTTTCTGATGATTTAAGCTGGGGTTTGTTTCACTATCATGGA
GCTGCACGAGTGGCGGGGCAGTCATATACCGGGGCAGTTCTTGTGAGCCCAGATGGCCAA
TATCCAGCTGAGAGGGAAAAAGAAAGGTTGGTATCTGCATTGGATAGATGTGGCATCAAA
GAGTGGGAGCTATTCAATGTTGATAATTGTTCATGTGAAGGTCCACCATTGGGGCTTCCG
GAGGGGTCAAGTTTGCATTCTAAGATTGAAGTCCAAGAGGGCAGGACACATGCTTCAGTA
TAG

Peptide Sequence

PEP ID

XP_016466133.1
PEP Infomation

PREDICTED: violaxanthin de-epoxidase, chloroplastic-like [Nicotiana tabacum]
Sequence

MNVNVAPSSSINSPATFPVNRRSSVAGLLNPLLLRCRKTKVSVFSSSLDRKIRATRRILA
AAALEMKEAEKKTSSPVRIVSIVGEDSVSPLNSAPWLDVMLHTAERLKWVDEEFEMIVFS
DNFINSQDETVNRVRNELDRADILVLVAVSKEGSVNWIQTNSQNVPNTICFDSSSALRNK
LGGILIETEKRGDIFSSLLPFSQSKKMNESVEIVRTVSEAWERHNADDIRFCLLVIINSY
ITPVSTLQNLRAKGFSTLNCMVTNCGPQILNCLLDPNCRKALQCLNQCSPVDQVCNYRCI
ASYESQYLEEFSLCVLQKNNCLELDAKIPEKPYVPPMTEFRGEILSSEIAEDLFVGWLGT
LNWSWRVVAGQNPAYDQFPCQYQLYYRGKARGSFWYEPVFQVRTLEDNLVWRRRKYRVKR
GKVPGTFQFSVLDNGVVSIESWTIVDVSDDLSWGLFHYHGAARVAGQSYTGAVLVSPDGQ
YPAEREKERLVSALDRCGIKEWELFNVDNCSCEGPPLGLPEGSSLHSKIEVQEGRTHASV

Transcript Sequence

Gene sequence data has not been registered.